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GOMMA Results for OAEI 2012

... ontologies from other areas. It could thus participate in all OAEI tracks running on the SEALS platform. GOMMA supports several methods for efficiently matching large ontologies in particular parallel matching on multiple cores or machines, reducing the ...

Publication - cat - 01/21/2018 - 12:06 - 0 comments - 1 attachment

On Matching Large Life Science Ontologies in Parallel

... Data Integration in the Life Sciences (DILS) URL:  ... for parallel matching on multiple compute nodes. In particular, we consider inter-matcher and intra-matcher parallelism as well ...

Publication - hartung - 07/26/2016 - 16:40 - 0 comments - 0 attachments

Discovering Evolving Regions in Life Science Ontologies

... Data Integration in the Life Sciences (DILS) URL:  ... - 9 Ontologies are heavily used in life sciences and evolve continuously to incorporate new or changed ...

Publication - hartung - 04/17/2013 - 12:27 - 0 comments - 0 attachments

Instance-Based Matching of Large Life Science Ontologies

... Proc. of Data Integration in the Life Sciences (DILS), 2007 URL:  ... 188.63 KB Ontologies are heavily used in life sciences so that there is increasing value to match different ...

Publication - hartung - 04/17/2013 - 02:49 - 0 comments - 1 attachment

Analyzing the Evolution of Life Science Ontologies and Mappings

... Data Integration in the Life Sciences (DILS) 2008 URL:  ... KB Ontologies are heavily developed and used in life sciences and undergo continuous changes. However, the evolution of ...

Publication - hartung - 04/17/2013 - 02:38 - 0 comments - 1 attachment

GOMMA: A Component-based Infrastructure for managing and analyzing Life Science Ontologies and their Evolution

... describe entities of domains, such as genes and proteins in life sciences. Their increasing size and the high frequency of updates resulting in a large set of ontology versions necessitates efficient management and ... (Compose, Diff, Journal, Mapping evolution, OA in the Life Sciences, Ontology evolution, Research paper, Versioning) ...

Publication - hartung - 04/16/2013 - 23:05 - 0 comments - 0 attachments

E ffective Mapping Composition for Biomedical Ontologies

... Semantic Interoperability in Medical Informatics @ ESWC 2012 ... promising for highly interconnected ontologies such as in the life science domain. There may be many ontologies that can be used for ...

Publication - hartung - 04/16/2013 - 22:49 - 0 comments - 1 attachment

Mapping Composition for Matching Large Life Science Ontologies

... need to interrelate different life science ontologies in order to facilitate data integration or semantic data analysis. Ontology ... linguistic and structural similarity of their concepts. In this paper we investigate an indirect computation of ontology mappings that ...

Publication - hartung - 04/16/2013 - 02:05 - 0 comments - 0 attachments

Efficient Management of Biomedical Ontology Versions

... Ontologies have become very popular in life sciences and other domains. They mostly undergo continuous changes and ... studies do not consider the ontology changes reflected in different versions but typically limit themselves to a specific ontology ...

Publication - hartung - 04/16/2013 - 00:38 - 0 comments - 0 attachments

An evolution-based approach for assessing ontology mappings - A case study in the life sciences

... Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW) ... and more robust ontology mappings. The approach is generic in that it can be applied independently from the utilized match technique. We ...

Publication - hartung - 04/16/2013 - 00:16 - 0 comments - 1 attachment

Estimating the Quality of Ontology-Based Annotations by Considering Evolutionary Changes

... 6th Intl. Workshop on Data Integration in the Life Sciences (DILS) URL:  ... object properties. Such annotation mappings are utilized in different applications and analysis studies whose results strongly depend on ...

Publication - hartung - 04/15/2013 - 23:38 - 0 comments - 0 attachments

OnEX: Exploring changes in life science ontologies

... Numerous ontologies have recently been developed in life sciences to support a consistent annotation of biological objects, such ... web interface to explore information about changes in current life science ontologies. It is available at ...

Publication - hartung - 04/15/2013 - 23:27 - 0 comments - 1 attachment