Schema Evolution publication categorizer

... to support data integration and analysis tasks. Changes in the ontologies also require the adaptation of ontology mappings. So far the ... attention albeit ontologies change continuously especially in the life sciences. We therefore analyze how mappings between popular life ...

Publication - hartung - 01/23/2018 - 14:25 - 0 comments - 0 attachments

... them (eg, search engines and decision support systems) in order to assure an acceptable level of performance. Despite the recent advances in ontology evolution systems, the maintenance of semantic annotations remains an open problem. In this paper, we introduce, based on previous experiments, the main ...

Publication - cat - 01/21/2018 - 12:16 - 0 comments - 0 attachments

... Data Integration in the Life Sciences (DILS) URL:  ... for parallel matching on multiple compute nodes. In particular, we consider inter-matcher and intra-matcher parallelism as well ...

Publication - hartung - 07/26/2016 - 16:40 - 0 comments - 0 attachments

... n/a The entities described in the Gene Ontology, (i.e., molecular functions, cellular components and biological processes), often make reference (in their names) to other entities, either from GO or from other ontologies, ...

Publication - hartung - 04/17/2013 - 12:05 - 0 comments - 0 attachments

... Workshop on Knowledge Discovery in Life Science Literature URL:  ... 483.55 KB In recent years many biomedical ontologies have been developed and many of ... able to use multiple ontologies they have to be aligned. In this paper we propose strategies for aligning ontologies based on life ...

Publication - cat - 04/17/2013 - 11:49 - 0 comments - 1 attachment

... solutions for them. (Journal, no paper type, OA in the Life Sciences) ...

Publication - hartung - 04/17/2013 - 03:16 - 0 comments - 1 attachment

... describe entities of domains, such as genes and proteins in life sciences. Their increasing size and the high frequency of updates resulting in a large set of ontology versions necessitates efficient management and ... (Compose, Diff, Journal, Mapping evolution, OA in the Life Sciences, Ontology evolution, Research paper, Versioning) ...

Publication - hartung - 04/16/2013 - 23:05 - 0 comments - 0 attachments

... Semantic Interoperability in Medical Informatics @ ESWC 2012 ... promising for highly interconnected ontologies such as in the life science domain. There may be many ontologies that can be used for ...

Publication - hartung - 04/16/2013 - 22:49 - 0 comments - 1 attachment

... 10 - 49 In this paper we survey the most interesting and novel approaches for the ... biological data represented through XML. (OA in the Life Sciences) ...

Publication - cat - 04/16/2013 - 10:16 - 0 comments - 0 attachments

... Research on ontologies is becoming widespread in the biomedical informatics community. At the same time, it has become ... ontologies have proven more difficult than many workers in the field initially expected. Discovering general, feasible methods has thus ...

Publication - hartung - 04/16/2013 - 09:16 - 0 comments - 0 attachments

... been developed for the purpose of annotating gene products in genome databases, and the UMLS has been developed as a framework for ... sources. The mapping of GO to UMLS highlighted issues in both terminology systems. After some initial explorations and discussions ...

Publication - hartung - 04/16/2013 - 09:05 - 0 comments - 0 attachments

... multiple ontologies. Because the entities described in the ontology often overlap with other entities in other ontologies, a mapping between two corresponding terms is required and ... and access biomedical ontologies. (no paper type, OA in the Life Sciences, Workshop) ...

Publication - cat - 04/16/2013 - 09:05 - 0 comments - 0 attachments

... inference is discussed. (Conference, no paper type, OA in the Life Sciences) ...

Publication - hartung - 04/16/2013 - 08:05 - 0 comments - 0 attachments

... need to interrelate different life science ontologies in order to facilitate data integration or semantic data analysis. Ontology ... linguistic and structural similarity of their concepts. In this paper we investigate an indirect computation of ontology mappings that ...

Publication - hartung - 04/16/2013 - 02:05 - 0 comments - 0 attachments

... Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW) ... and more robust ontology mappings. The approach is generic in that it can be applied independently from the utilized match technique. We ...

Publication - hartung - 04/16/2013 - 00:16 - 0 comments - 1 attachment

... 6th Intl. Workshop on Data Integration in the Life Sciences (DILS) URL:  ... object properties. Such annotation mappings are utilized in different applications and analysis studies whose results strongly depend on ...

Publication - hartung - 04/15/2013 - 23:38 - 0 comments - 0 attachments

... the rich Web of interconnected and annotated objects in multiple repositories, and to identify meaningful associations. Consider a physical link between objects in two repositories, where each of the objects is annotated with controlled ...

Publication - hartung - 04/15/2013 - 23:05 - 0 comments - 0 attachments

... 211.45 KB Creating mappings between concepts in different ontologies is a critical step in facilitating data integration. In recent years, researchers have developed ...

Publication - cat - 04/15/2013 - 22:38 - 0 comments - 1 attachment

... ontologies. We analyzed ontologies and terminologies in BioPortal and the Unified Medical Language System (UMLS), creating more than 4 million mappings between concepts in these ontologies and terminologies based on the lexical similarity of ...

Publication - cat - 04/15/2013 - 22:05 - 0 comments - 1 attachment

... Cantor, MN; Sarkar, IN; Gelman, R; F Hartel, O .. Author:  ... MN Sarkar, IN Gelman, R ...

Publication - cat - 04/15/2013 - 21:49 - 0 comments - 0 attachments

... collect ontologies automatically by crawling the Web; in other repositories, users submit ontologies themselves. In addition to providing search across multiple ontologies, the added value of ...

Publication - cat - 04/15/2013 - 21:38 - 0 comments - 0 attachments

... the categorization of terms from terminological resources in biomedicine. BioTop has recently been developed as an upper-level ontology for the biomedical domain. In contrast to the SN, it is founded upon strict ontological principles, using ...

Publication - cat - 04/15/2013 - 21:27 - 0 comments - 0 attachments

... NCI Thesaurus entries reference corresponding nodes in the UMLS Semantic Network (SN). Adapting a process previously used to refine relationship definitions in the UMLS Metathesaurus, we used these Thesaurus-to-Network references to ...

Publication - cat - 04/15/2013 - 20:49 - 0 comments - 0 attachments

... 100 - 499 In recent years, ontologies have become a mainstream topic in biomedical research. When biological entities are described using a common ...

Publication - cat - 04/15/2013 - 20:38 - 0 comments - 0 attachments