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Linking the Gene Ontology to other biomedical ontologies

... n/a The entities described in the Gene Ontology, (i.e., molecular functions, cellular components and biological processes), often make reference (in their names) to other entities, either from GO or from other ontologies, ...

Publication - hartung - 04/17/2013 - 12:05 - 0 comments - 0 attachments

Alignment of biomedical ontologies using life science literature

... Workshop on Knowledge Discovery in Life Science Literature URL:  ... 483.55 KB In recent years many biomedical ontologies have been developed and many of ... able to use multiple ontologies they have to be aligned. In this paper we propose strategies for aligning ontologies based on life ...

Publication - cat - 04/17/2013 - 11:49 - 0 comments - 1 attachment

Challenges in precisely aligning models of human anatomy using generic schema matching

... solutions for them. (Journal, no paper type, OA in the Life Sciences) ...

Publication - hartung - 04/17/2013 - 03:16 - 0 comments - 1 attachment

Mapping the Gene Ontology into the Unified Medical Language System

... been developed for the purpose of annotating gene products in genome databases, and the UMLS has been developed as a framework for ... sources. The mapping of GO to UMLS highlighted issues in both terminology systems. After some initial explorations and discussions ...

Publication - hartung - 04/16/2013 - 09:05 - 0 comments - 0 attachments

Oasis: A Mapping and Integration Framework for Biomedical Ontologies

... multiple ontologies. Because the entities described in the ontology often overlap with other entities in other ontologies, a mapping between two corresponding terms is required and ... and access biomedical ontologies. (no paper type, OA in the Life Sciences, Workshop) ...

Publication - cat - 04/16/2013 - 09:05 - 0 comments - 0 attachments

Aligning representations of anatomy using lexical and structural methods

... inference is discussed. (Conference, no paper type, OA in the Life Sciences) ...

Publication - hartung - 04/16/2013 - 08:05 - 0 comments - 0 attachments

An evolution-based approach for assessing ontology mappings - A case study in the life sciences

... Proc. of 13. GI-Fachtagung für Datenbanksysteme in Business, Technologie und Web (BTW) ... and more robust ontology mappings. The approach is generic in that it can be applied independently from the utilized match technique. We ...

Publication - hartung - 04/16/2013 - 00:16 - 0 comments - 1 attachment

Using annotations from controlled vocabularies to find meaningful associations

... the rich Web of interconnected and annotated objects in multiple repositories, and to identify meaningful associations. Consider a physical link between objects in two repositories, where each of the objects is annotated with controlled ...

Publication - hartung - 04/15/2013 - 23:05 - 0 comments - 0 attachments